[9] **viXra:0810.0013 [pdf]**
*submitted on 26 Oct 2008*

**Authors:** Matti Pitkänen

**Comments:** recovered from sciprint.org

This article represents a speculative model in which a connection between homeopathy and water
memory with phantom DNA effect is proposed and on basis of this connection a vision about how the
hardware of topological quantum computation (tqc) represented by the genome is actively developed
by subjecting it to evolutionary pressures represented by a virtual world representation of the physical
environment and internal mileau including basic bio-molecules. The most important result is the
discovery that the analogs of DNA, RNA and aminoacid are realized as dark nuclei realized as neutral
dark nuclear strings. Vertebrate nuclear genetic code is predicted correctly. The result suggests deep
and totally unexpected connection between elementary particle physics and biology.

**Category:** Quantum Gravity and String Theory

[8] **viXra:0810.0012 [pdf]**
*submitted on 26 Oct 2008*

**Authors:** Matti Pitkänen

**Comments:** recovered from sciprint.org

The identification of the experienced time te and geometric time tg involves well-known problems.
Physicist is troubled by the reversibility of tg contra irreversibility of te, by the con
ict between
determinism of Schrödinger equation and the non-determinism of state function reduction, and by
the poorly understood the origin of the arrow of tg. In biology the second law of thermodynamics
might be violated in its standard form for short time intervals. Neuroscientist knows that the moment
of sensory experience has a finite duration, does not understand what memories really are, and is
bothered by the Libet's puzzling finding that neural activity seems to precede conscious decision.
These problems are discussed in the framework of Topological Geometrodynamics (TGD) and TGD
inspired theory of consciousness constructed as a generalization of quantum measurement theory. In
TGD space-times are regarded as 4-dimensional surfaces of 8-dimensional space-time H = M4xCP2
and obey classical field equations. The basic notions of consciousness theory are quantum jump
and self. Subjective time is identified as a sequence of quantum jumps. Self has as a geometric
correlate a fixed volume of H- "causal diamond"-defining the perceptive field of self. Quantum
states are regarded as quantum superpositions of space-time surfaces of H and by quantum classical
correspondence assumed to shift towards the geometric past of H quantum jump by quantum jump.
This creates the illusion that perceiver moves to the direction of the geometric future. Self is curious
about the geometric future and induces the shift bringing it to its perceptive field. Macroscopic
quantum coherence and the identification of space-times as surfaces in H play a crucial role in this
picture allowing to understand also other problematic aspects in the relationship between experienced
and geometric time.

**Category:** Quantum Gravity and String Theory

[7] **viXra:0810.0011 [pdf]**
*submitted on 26 Oct 2008*

**Authors:** Matti Pitkänen

**Comments:** recovered from sciprint.org

In this article a unified model of nerve pulse and EEG is discussed.

**Category:** Quantum Gravity and String Theory

[6] **viXra:0810.0010 [pdf]**
*submitted on 26 Oct 2008*

**Authors:** Matti Pitkänen

**Comments:** recovered from sciprint.org

Peter Gariaev and collaborators have reported several strange effects of laser light and
also ordinary light on DNA. These findings include the rotation of polarization plane of laser
light by DNA, phantom DNA effect, the transformation of laser light to radio-wave photons
having biological effects, the coding of DNA sequences to the modulated polarization plane of
laser light and the ability of this kind of light to induce gene expression in another organisms
provided the modulated polarization pattern corresponds to an "address" characterizing the
organism, and the formation of images of what is believed to be DNA sample itself and of the
objects of environment by DNA sample in a cell irradiated by ordinary light in UV-IR range. In
this chapter a TGD based model for these effects is discussed. A speculative picture proposing
a connection between homeopathy, water memory, and phantom DNA effect is discussed and
on basis of this connection a vision about how the tqc hardware represented by the genome
is actively developed by subjecting it to evolutionary pressures represented by a virtual world
representation of the physical environment. The speculation inspired by this vision is that
genetic code as well as DNA-, RNA- and amino-acid sequences should have representation
in terms of nuclear strings. The model for dark baryons indeed leads to an identification of
these analogs and the basic numbers of genetic code including also the numbers of aminoacids
coded by a given number of codons are predicted correctly. Hence it seems that genetic code
is universal rather than being an accidental outcome of the biological evolution.

**Category:** Quantum Gravity and String Theory

[5] **viXra:0810.0009 [pdf]**
*submitted on 26 Oct 2008*

**Authors:** Matti Pitkänen

**Comments:** recovered from sciprint.org

The model for the evolution of genetic code leads to the idea that the folding of proteins
obeys a folding code inherited from the genetic code. After some trials one ends up with a
general conceptualization of the situation with the identification of wormhole magnetic
ux
tubes as correlates of attention at molecular level so that a direct connection with TGD
inspired theory of consciousness emerges at quantitative level. This allows a far reaching
generalization of the DNA as topological quantum computer paradigm and makes it much
more detailed. By their asymmetric character hydrogen bonds are excellent candidates for
magnetic
ux tubes serving as correlates of attention at molecular level.

**Category:** Quantum Gravity and String Theory

[4] **viXra:0810.0008 [pdf]**
*submitted on 26 Oct 2008*

**Authors:** Matti Pitkänen

**Comments:** recovered from sciprint.org

The topics of the chapter has been restricted to those, which seem to represent the most
well-established ideas. There are many other, more speculative, ideas such as the strong form
of the hypothesis that plasmoid like life forms molecular life forms has evolved in "Mother
Gaia's womb", maybe even in the hot environment defined by the boundary of mantle and
core.

**Category:** Quantum Gravity and String Theory

[3] **viXra:0810.0007 [pdf]**
*submitted on 26 Oct 2008*

**Authors:** Matti Pitkänen

**Comments:** recovered from sciprint.org

This article represents a vision about how DNA might act as a topological quantum computer
(tqc). Tqc means that the braidings of braid strands define tqc programs and M-matrix
(generalization of S-matrix in zero energy ontology) defining the entanglement between states
assignable to the end points of strands define the tqc usually coded as unitary time evolution
for Schrödinger equation. One can ends up to the model in the following manner.

**Category:** Quantum Gravity and String Theory

[2] **viXra:0810.0006 [pdf]**
*submitted on 26 Oct 2008*

**Authors:** Matti Pitkänen

**Comments:** recovered from sciprint.org

Basic ideas of TGD inspired view about quantum biology are discussed. TGD inspired
theory of consciousness provides the basic conceptual framework besides new view about
spacetime and quantum theory, in particular dark matter hierarchy whose levels are labelled by the
increasing value of Planck constant so that macroscopic quantum systems are predicted to be
present in all length scales. This gives a justification for the notion of field body having
onionlike fractal structure with astrophysical size and using biological body as a sensory receptor and
motor instrument. Great evolutionary leaps correspond naturally to the increases of Planck
constant for the highest level in "personal" hierarchy of Planck constants implying a scaling
up of time scales of long term memory and planned action. The notion of magnetic body leads
to a generalization of the notion genome: one can assign coherently expressed super genome to
single organ and hyper genome to an entire population. Important experimental input comes
from high Tc superconductivity, from the strange findings related to cell membrane, and from
the effects of ELF em fields on vertebrate brain. The model for EEG based on "dark" photons
predicts correctly its band structure and also narrow resonances in theta and beta bands in
terms of cyclotron resonance frequencies of biologically important ions.

**Category:** Quantum Gravity and String Theory

[1] **viXra:0810.0005 [pdf]**
*submitted on 26 Oct 2008*

**Authors:** Matti Pitkänen

**Comments:** recovered from sciprint.org

A brief summary of various competing visions about the basic principles of quantum Topological
Geometrodynamics (TGD) and about tensions between them is given with emphasis on the recent
developments. These visions are following. Quantum physics as as classical spinor field geometry of the "world of
classical worlds" consisting or light-like 3-surfaces of the 8-D imbedding space H = M4xCP2; zero energy
ontology in which physical states correspond to physical events; TGD as almost topological quantum field
theory for light-like 3-surfaces; physics as a generalized number theory with associativity defining the
fundamental dynamical principle and involving a generalization of the number concept based on the fusion of
real and p-adic number fields to a larger book like structure, the identification of real and various p-adic
physics as algebraic completions of rational physics, and the notion of infinite prime; the identification of
configuration space Clifford algebra elements as hyper-octonionic conformal fields with associativity
condition implying what might be called number theoretic compacticitation; a generalization of quantum theory
based on the introduction of hierarchy of Planck constants realized geometrically via a generalization of
the notion of imbedding space H to a book like structure with pages which are coverings and orbifolds
of H; the notion of finite measurement resolution realized in terms of inclusions of hyperfinite factors
as the fundamental dynamical principle implying a generalization of S-matrix to M-matrix identified as
Connes tensor product for positive and negative energy parts of zero energy states; two different kinds
of extended super-conformal symmetries assignable to the light-cone of H and to the light-like 3-surfaces
leading to a concrete construction recipe of M-matrix in terms of generalized Feynman diagrams having
light-like 3-surfaces as lines and allowing to formulate generalized Einstein's equations in terms of coset
construction.

**Category:** Quantum Gravity and String Theory